AW: DM: Data mining on raw sequence data

[Uta Bohnebeck]

Hi,
additionally there were work done by Wang et al.
for instance see:

@article{wang96b,
  author  = {Jason T. L. Wang and Thomas G. Marr and Dennis Shasha 
and Bruce 
Shapiro and Gung-Wei Chirn},
  title   = {{Discovery Active Motifs is Sets of Related Protein 
Sequences and 
Using Them for Classification}},
  journal = {Nucleic Acid Research},
  volume = {22},
  number = {14},
  year       = {1996},
  pages    = {2769-2775},
}

@inproceedings{wang96,
  author  = {Jason T. L. Wang and Bruce A. Shapiro and Dennis Shasha 
and 
Kaizhong Zhang and Chia-Yo Chang},
  title   = {{Automated Discovery of Active Motifs in Multiple RNA 
Secondary 
Structures}},
  editor  = {Evangelos Simoudis and Jiawei Han and Usama Fayyad},
  booktitle = KDD96,
  publisher = AAAIP,
  year       = {1996},
  pages    = {70-75},
}

@inproceedings{wang97,
  author  = {Xiong Wang and Jason T. L. Wang and Dennis Shasha and 
Bruce A. 
Shapiro and
             Sitaram Dikshitulu and Isidore Rigoutsos and Kaizhong 
Zhang},
  title   = {{Automated Discovery of Active Motifs in Three 
Dimensional 
Molecules}},
  editor  = {David Heckerman and Heikki Mannila and Daryl Pregibon 
and Ramasamy 
Uthurusamy},
  booktitle = KDD97,
  publisher = AAAIP,
  year       = {1997},
  pages     = {89-95},
}

Best regards
Uta Bohnebeck

-----Ursprüngliche Nachricht-----
Von:    e sommer [SMTP:esommer@intellicorp.com]
Gesendet am:    Freitag, 6. November 1998 12:20
An:     Mahmut Uludag
Cc:     datamine-l@nautilus-sys.com
Betreff:        Re: DM: Data mining on raw sequence data



Stephen Muggleton and Ross King in the U.K. have done
a lot of work on protein folding etc. (web search
should turn up lots) -- but they use a (to my mind more appropriate)
relational modeling approach, so if you are set on feature vectors,
there will nothing to reuse directly from that camp.

eddi


At 02:44 PM 11/6/98 +0200, Mahmut Uludag wrote:
>
>Hello,
>
>Is there any data-mining software which is able to extract 
>information
>from raw sequence data, e.g. DNA sequence data.
>In other words, is there any data-mining software which also 
>transform
>sequence data into feature vectors.
>I would appreciate any answer, especially from the data-mining 
>software
>vendors.
>
>Mahmut Uludag
>Researcher
>

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